To provide interactive access to the sequencing datasets from various publications, we have a JBrowse site with a number of datasets available (choose Linear View > NC_002695.2):
At the moment, the JBrowse site has data from our transcriptomics studies in enterohaemorrhagic E. coli (EHEC):
- RNA-seq data
- RNA 5′ end mapping (dRNA-seq)
- RNA 3′ end mapping (Term-seq)
- Protein-RNA interaction sites determined by UV-crosslinking (CRAC) for:
- Hfq
- RNase E
We will be adding new data in the near future including:
- Staphyloccocus aureus transcriptomics
- Staphyloccocus aureus transcript boundary mapping
- Staphyloccocus aureus CRAC data
- EHEC and S. aureus CLASH data
- Additional EHEC protein-RNA interaction (CRAC) datasets
If you have feedback on the JBrowse site please contact Jai Tree at j.tree[at]unsw.edu.au
Tree Lab 